Why does amino acids with similar chemical properties often have similar codons?
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One remarkable feature of the genetic code is that amino acids with similar chemical properties often have similar codons. For example...codons with U or C as the second nucleotide tends to specify hydrophobic amino acids. Can you suggest a possible explanation for this phenomenon in terms of preservation of the protein product.
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Answer:
The genetic code is redundant - that is several codons per amino acid. A practical consequence of redundancy is that some errors in the genetic code only cause a silent mutation or an error that would not affect the protein because the hydrophilicity or hydrophobicity is maintained by equivalent substitution of amino acids; for example, a codon of NUN (where N = any nucleotide) tends to code for hydrophobic amino acids. NCN yields amino acid residues that are small in size and moderate in hydropathy; NAN encodes average size hydrophilic residues; UNN encodes residues that are not hydrophilic
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Other answers
It suggests the code evolved. With one exception, tryptophan, nonpolar amino acids follow the pattern you mentioned. Tryptophan is coded by a combination that closely resembles the three stop codons. Acidic amino acids are coded by GA_. The corresponding amides differ in one base. An important consequence is that single codon changes are likely to produce a protein with similar properties. Additional benefits include a reduced tRNA library with flexibility in the 3rd codon, "wobble base pairing".
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